Whole Wheat Bagels
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Learn how to make savory and delicious Whole Wheat Bagels with a perfectly chewy bagel texture. Top with everything seasoning.
![whole wheat bagels on a table with cream cheese](https://www.tastesoflizzyt.com/wp-content/uploads/2025/01/whole-wheat-bagel-recipe_-2.jpg)
Fun fact about me; One of my all-time favorite breakfasts is a warm toasted bagel, that has been buttered and smeared with a good dollop of tangy cream cheese.
The very idea of making homemade bagels was so foreign and daunting to me, that I actually avoided trying it for years.
When I finally got up the courage to try, I realized that not only are they really easy to make, but they are also be so much fun! If you have been wanting to try your hand at homemade bagels, I encourage you to give this simple whole wheat bagel recipe a try. They have an amazing outer crust, and a chewy texture that is to die for.
Bagel Additions:
Looking to add a different flavor to your bagels? Try raisins, chocolate chips or any other dried fruit. You could even add our cinnamon chips for a cinnamon crunch bagel.
Bagel Toppings:
This whole wheat bagel recipe calls for an โeverythingโ topping, but honestly you could customize the topping to whatever suits your fancy. I often top them with just sesame seeds, or a seeded oat mixture, and if I am feeling like something a little sweet, these taste absolutely amazing when topped with cinnamon sugar.
So I definitely encourage you to play around with different flavor combinations to suite your family & just have some a good time baking them, because that really is half the fun!
We’ve served our grilled pork burgers on these whole wheat bagels. They are great even for breakfast!
Love whole wheat? Try our sourdough discard whole wheat bread, whole wheat sourdough pancakes or whole wheat cinnamon pancakes.
Whole Wheat Bagels
Learn how to make savory and delicious Whole Wheat Bagels with a perfectly chewy bagel texture. Top with everything seasoning.
Servings 8 servings
Prep Time 35 minutes
Cook Time 20 minutes
Rise Time 45 minutes
Total Time 1 hour 40 minutes
Ingredients
For the everything seasoning:
- 3 tablespoons sesame seeds
- 3 tablespoons poppy seeds
- 1 1/2 tablespoons dried onion flakes
- 1 tablespoon dried garlic flakes
- 1 1/2 teaspoons coarse sea salt
For the bagels:
- 1 1/2 cups warm water 110-115ยบF
- 1 package instant yeast
- 2 tablespoons molasses
- 2 cups whole wheat flour
- 1 3/4 cups bread flour
- 2 teaspoons salt
- 1 pot of boiling water
- 2 teaspoons baking soda
- 1 tablespoon granulated sugar
- 1/4 cup cornmeal for the baking sheet
- 1 egg, to brush on bagels beaten
Instructions
- To make the seasoning, mix everything together in a small bowl and cover with plastic wrap. Set aside. 3 tablespoons sesame seeds, 3 tablespoons poppy seeds , 1 ½ tablespoons dried onion flakes, 1 tablespoon dried garlic flakes , 1 ½ teaspoons coarse sea salt
- Pour the warm water into the bowl of a stand mixer. Sprinkle the yeast over the top and allow the yeast to activate for 3-4 minutes. 1 ½ cups warm water, 1 package instant yeast
- Add in the molasses, flours and salt and begin mixing with the paddle attachment. Mix just until combined and let the dough rest for 5 minutes. 2 tablespoons molasses , 2 cups whole wheat flour , 1 ¾ cups bread flour , 2 teaspoons salt
- Switch to the dough hook and knead the dough for 5-7 minutes on low speed.
- Place the dough in a greased bowl and cover with a towel. Allow the dough to rise for 30-35 minutes or until the dough is nearly doubled.
- Preheat the oven to 425ยบF and line 2 baking sheets with parchment paper or a silicone baking mat. Once the dough has risen, punch it down to release the air and turn it out onto a lightly floured surface.
- Cut the dough into 8 equal portions. Shape into balls. Use your thumb to punch a hole through the center of each ball. Gently stretch the hole to the desired size, shaping the bagel. Set aside on the prepared baking sheet. Allow the dough to rest for 15 minutes.
- While the dough is resting, bring a large pot of water to a boil. Once the water is boiling, add baking soda and sugar, stirring to dissolve fully. 1 pot of boiling water, 2 teaspoons baking soda , 1 tablespoon granulated sugar
- Depending on the size of your pot, place 3-4 bagels into the boiling water at a time. Boil for 60 seconds on one side, flip the bagel and boil for another 60 seconds on the other side. Remove from boiling water with a strainer or slotted spoon, allowing excess liquid to drip off.
- Sprinkle cornmeal over the parchment paper, then place the bagels onto the baking sheet. Brush the bagels with the beaten egg and sprinkle with everything seasoning. Bake for 18-20 minutes or until golden brown. Allow to cool for at least 15 minutes before slicing and serving. ¼ cup cornmeal, 1 egg, to brush on bagels
Notes
- Swap out the molasses for the same amount of honey if desired. The bagels might not be quite as dark in color though.
- Makes 8 full size bagels.
- To freeze your bagels, allow them to cool completely and place them in a sealed plastic bag. Freeze for up to 6 weeks.
- Refer to the article above for more tips and tricks. The calories shown are based on the recipe making 6 bagels, with 1 serving being 1 bagel. Since different brands of ingredients have different nutritional information, the calories shown are just an estimate. **We are not dietitians and recommend you seek a nutritionist for exact nutritional information. **
Nutrition
Calories: 390kcal | Carbohydrates: 55g | Protein: 11g | Fat: 14g | Saturated Fat: 6g | Cholesterol: 51mg | Sodium: 1508mg | Potassium: 340mg | Fiber: 5g | Sugar: 6g | Vitamin A: 410IU | Vitamin C: 0.7mg | Calcium: 138mg | Iron: 3.7mg
I found this recipe by scrolling and I made a batch yesterday. They were delicious specially with everything on it. They were gone this morning so I made a double batch today. I just added a little more flour to make it less sticky and everything turned out great I did everything by hand, the molasses really helped give a nice taste and color
The recipe calls for instant yeast but my understanding is that instant yeast doesn’t need to be proofed. Does that mean active dry yeast would work just as well in the recipe, as long as you proof it? And if you use instant you don’t have to proof it?
Hi and thank you for the recipe
Can you freeze these ? And if not how many days do they remain fresh ?
I’m not sure what went wrong but my bagels came out very flat and lumpy. I’ve made bagels before using a different recipe with great success so I know the problem isn’t technique. The flavor is good.
Anxious to try recipe, but are the nutrition guide lines for large bagels?
Hi there, thanks for the recipe! I’m leaving a comment mainly for anyone that’s looking to try out this recipe- as other commenters said, the dough is super sticky and difficult to work with. The bagels still came out fine, but it would have been nice for the recipe to have addressed this because the whole time I was making them I was convinced I was doing something wrong. Shaping them was nearly impossible! They tasted good but looked a hot mess!